diff --git a/build-package.sh b/build-package.sh
index f6f9620f43..b1033f0319 100755
--- a/build-package.sh
+++ b/build-package.sh
@@ -107,6 +107,10 @@ source "$TERMUX_SCRIPTDIR/scripts/build/termux_get_repo_files.sh"
 # shellcheck source=scripts/build/termux_step_get_dependencies.sh
 source "$TERMUX_SCRIPTDIR/scripts/build/termux_step_get_dependencies.sh"
 
+# Handle config scripts that needs to be run during build. Not to be overridden by packages.
+# shellcheck source=scripts/build/termux_step_override_config_scripts.sh
+source "$TERMUX_SCRIPTDIR/scripts/build/termux_step_override_config_scripts.sh"
+
 # Remove old src and build folders and create new ones
 # shellcheck source=scripts/build/termux_step_setup_build_folders.sh
 source "$TERMUX_SCRIPTDIR/scripts/build/termux_step_setup_build_folders.sh"
@@ -437,6 +441,7 @@ for ((i=0; i<${#PACKAGE_LIST[@]}; i++)); do
 
 		if [ "$TERMUX_CONTINUE_BUILD" == "false" ]; then
 			termux_step_get_dependencies
+			termux_step_override_config_scripts
 		fi
 
 		termux_step_create_timestamp_file
diff --git a/scripts/build/termux_step_override_config_scripts.sh b/scripts/build/termux_step_override_config_scripts.sh
new file mode 100644
index 0000000000..f6af023d61
--- /dev/null
+++ b/scripts/build/termux_step_override_config_scripts.sh
@@ -0,0 +1,23 @@
+termux_step_override_config_scripts() {
+	if [ "$TERMUX_INSTALL_DEPS" == true ] && [ "$TERMUX_PKG_DEPENDS" != "${TERMUX_PKG_DEPENDS/libllvm/}" ]; then
+		LLVM_DEFAULT_TARGET_TRIPLE=$TERMUX_HOST_PLATFORM
+		if [ $TERMUX_ARCH = "arm" ]; then
+			LLVM_TARGET_ARCH=ARM
+		elif [ $TERMUX_ARCH = "aarch64" ]; then
+			LLVM_TARGET_ARCH=AArch64
+		elif [ $TERMUX_ARCH = "i686" ]; then
+			LLVM_TARGET_ARCH=X86
+		elif [ $TERMUX_ARCH = "x86_64" ]; then
+			LLVM_TARGET_ARCH=X86
+		fi
+		LIBLLVM_VERSION=$(. $TERMUX_SCRIPTDIR/packages/libllvm/build.sh; echo $TERMUX_PKG_VERSION)
+		sed $TERMUX_SCRIPTDIR/packages/libllvm/llvm-config.in \
+			-e "s|@TERMUX_PKG_VERSION@|$LIBLLVM_VERSION|g" \
+			-e "s|@TERMUX_PREFIX@|$TERMUX_PREFIX|g" \
+			-e "s|@TERMUX_PKG_SRCDIR@|$TERMUX_TOPDIR/libllvm/src|g" \
+			-e "s|@LLVM_TARGET_ARCH@|$LLVM_TARGET_ARCH|g" \
+			-e "s|@LLVM_DEFAULT_TARGET_TRIPLE@|$LLVM_DEFAULT_TARGET_TRIPLE|g" \
+			-e "s|@TERMUX_ARCH@|$TERMUX_ARCH|g" > $TERMUX_PREFIX/bin/llvm-config
+		chmod 755 $TERMUX_PREFIX/bin/llvm-config
+	fi
+}
diff --git a/scripts/build/termux_step_start_build.sh b/scripts/build/termux_step_start_build.sh
index c263ede4ac..7580cd6bd9 100644
--- a/scripts/build/termux_step_start_build.sh
+++ b/scripts/build/termux_step_start_build.sh
@@ -71,28 +71,6 @@ termux_step_start_build() {
 		return
 	fi
 
-	if [ "$TERMUX_INSTALL_DEPS" == true ] && [ "$TERMUX_PKG_DEPENDS" != "${TERMUX_PKG_DEPENDS/libllvm/}" ]; then
-		LLVM_DEFAULT_TARGET_TRIPLE=$TERMUX_HOST_PLATFORM
-		if [ $TERMUX_ARCH = "arm" ]; then
-			LLVM_TARGET_ARCH=ARM
-		elif [ $TERMUX_ARCH = "aarch64" ]; then
-			LLVM_TARGET_ARCH=AArch64
-		elif [ $TERMUX_ARCH = "i686" ]; then
-			LLVM_TARGET_ARCH=X86
-		elif [ $TERMUX_ARCH = "x86_64" ]; then
-			LLVM_TARGET_ARCH=X86
-		fi
-		LIBLLVM_VERSION=$(. $TERMUX_SCRIPTDIR/packages/libllvm/build.sh; echo $TERMUX_PKG_VERSION)
-		sed $TERMUX_SCRIPTDIR/packages/libllvm/llvm-config.in \
-			-e "s|@TERMUX_PKG_VERSION@|$LIBLLVM_VERSION|g" \
-			-e "s|@TERMUX_PREFIX@|$TERMUX_PREFIX|g" \
-			-e "s|@TERMUX_PKG_SRCDIR@|$TERMUX_TOPDIR/libllvm/src|g" \
-			-e "s|@LLVM_TARGET_ARCH@|$LLVM_TARGET_ARCH|g" \
-			-e "s|@LLVM_DEFAULT_TARGET_TRIPLE@|$LLVM_DEFAULT_TARGET_TRIPLE|g" \
-			-e "s|@TERMUX_ARCH@|$TERMUX_ARCH|g" > $TERMUX_PREFIX/bin/llvm-config
-		chmod 755 $TERMUX_PREFIX/bin/llvm-config
-	fi
-
 	# Make $TERMUX_PREFIX/bin/sh executable on the builder, so that build
 	# scripts can assume that it works on both builder and host later on:
 	[ "$TERMUX_ON_DEVICE_BUILD" = "false" ] && ln -sf /bin/sh "$TERMUX_PREFIX/bin/sh"